SIB Swiss Institute of Bioinformatics

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e-learning

Data Repositories for Bioinformatics

• beginner
Data management Online Repository Data reuse Data mining FAIR Data
Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions

• beginner
biodiversity non model organisms evolution and phylogeny genes and genomes comparative genomics evolutionary biology training marc robinson-rechavi group robert waterhouse group christophe dessimoz group
Using ASAP for Single-Cell Analysis

• beginner
genes and genomes biomarkers experimental biology functional genomics next generation sequencing population genomics single-cell biology training transcriptomics bart deplancke group
Using Large Language Models for Biodata Exploration: From Theory to Practice

• beginner
machine learning mark ibberson group training
Multiomics Data Analysis and Integration

• beginner
data integration multiomics data analysis
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
e-learning

BLAST and multiple sequence alignment (MSA) programs

• beginner
Sequence analysis Blast Multiple sequence alignment
BLAST and multiple sequence alignment (MSA) programs

• beginner
Blast E learning Multiple sequence alignment
e-learning

UNIX Fundamentals

• beginner
Computer science Problem based learning Programming Unix
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
e-learning

neXtProt : Exploring human proteins

• beginner
Proteins Proteomics Human biology
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling
e-learning

Cellosaurus : A resource on cell lines

• beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
Vital-IT Infrastructure Usage
e-learning

Explore and Visualize Your Data with Python

•• intermediate
Data visualisation Bioinformatics Python Data analysis
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
Data Analysis and Representation in Python

•• intermediate
programming,data analysis,training,data visualisation,torsten schwede & thierry sengstag group,mark ibberson group programming,training,torsten schwede & thierry sengstag group,mark ibberson group
R Basics Quiz

• beginner
Spatial Omics Data Analysis

•• intermediate
ViralZone

Phylogenetics of animal viral pathogens

• beginner
Animal pathogens E learning Phylogenetics
First Steps with SQL for Data Science

• beginner
SQL programming
ISMARA and CREMA: automatically inferring gene regulatory networks from gene expression, chromatin accessibility or epigenome data

• beginner
Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics,genes and genomes,next generation sequencing,transcriptomics,training functional genomics,genes and genomes,next generation sequencing,transcriptomics,training,torsten schwede & thierry sengstag group
Video, E-learning

FAIR principles in practice for health data

• beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework …
ISMARA: A tool to infer genome-wide regulatory interactions
Querying SIB resources with SPARQL
Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

• beginner
functional genomics genes and genomes next generation sequencing transcriptomics training torsten schwede & thierry sengstag group
SARS-CoV-2 : Studying a new virus
Introduction to Large Language Models for Life Scientists

• beginner
machine learning mark ibberson group training

Showing 30 events out of 67 (also found 608 past events)

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Data Repositories for Bioinformatics

Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions

Using ASAP for Single-Cell Analysis

Using Large Language Models for Biodata Exploration: From Theory to Practice

Multiomics Data Analysis and Integration

How to use V-pipe (SARS-CoV-2 data)

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

Data Analysis and Representation in Python

R Basics Quiz

Spatial Omics Data Analysis

Phylogenetics of animal viral pathogens

First Steps with SQL for Data Science

ISMARA and CREMA: automatically inferring gene regulatory networks from gene expression, chromatin accessibility or epigenome data

Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

FAIR principles in practice for health data

ISMARA: A tool to infer genome-wide regulatory interactions

Querying SIB resources with SPARQL

Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

SARS-CoV-2 : Studying a new virus

Introduction to Large Language Models for Life Scientists

Introduction to High-performance Computing (sciCORE Cluster)

Biology-informed Integration and Visualisation of Multiomics Data

Long-read Sequence Analysis

Bioinformatics of Arboviruses: Genomics, Evolution and Surveillance

Multiomics Data Analysis and Integration

First Steps with R in Life Sciences

First Steps with R in Life Sciences

First Steps with Python in Life Sciences

Nextflow in Action: Build Smarter, Faster, Reproducible Pipelines

Single-Cell Transcriptomics with R

Best Practices in High-Perfomance Computing (sciCORE cluster)

Bonsai: Exploratory Analysis of Single-cell Data

Statistics and Machine Learning for Life Sciences

Introduction to R Shiny

Interactive Visualisation with Python

Introduction to Sequencing Data Analysis

Interactive Visualization with Python

Data Analysis and Representation in Python

Nanopore Direct RNA Sequencing Data Analysis

First Steps with SQL for Data Science

Federated Learning in Bioinformatics

Introduction to Metagenomics Data Analysis of Microbial Communities

Introduction to High-performance Computing (sciCORE Cluster)

How to make best use of Cellosaurus

First Steps in Parallelization with OpenMP

Biodiversity Data Unlocked: Publishing in GBIF with IPT

Gene Expression made Useful Easily: Tools and Database of Bgee

Introduction to Machine Learning with Python

Missing Data and Imputation Methods

Docker and Singularity for Reproducible Research: Getting Started with Containers